General Help:
Introduction
Processing
Navigating
Glossary
Page Descriptions:
Search
Results
Summary
Plotting/Summary
HowTo:
Search by Name
Search by Coord
Search by Obsid
Download Data
Change Display Columns
Sorting Display Columns
Plot Customization:
Plotting
Getting to the GUI
Example
HELP TOPICS


TGCat: (T)ransmission (G)ratings (Cat)alog

and

Archive

Introduction

The TGCat web tool is designed to be easily navigable and straightforward. Because this catalog is designed to be user friendly, we encourage the user to comment on its content and navigability. This can be done by sending comments/questions/suggestion to the TGCat administrator at tgcat@space.mit.edu. On every page there are links that will bring you to a particular topic on this page for in-depth help, please consult these help pages for questions before contacting the administrator.

This catalog is an interface to an archive of X-ray spectra taken with the diffraction grating spectrometers on the Chandra X-ray Observatory. Here you can Chandra has two diffraction grating instruments, the High Energy Transmission Grating (HETG), and the Low Energy Transmission Grating (LETG). When used with their primary readout arrays, they are known as the HETG and LETG spectrometers (HETGS and LETGS, respectively). The readout arrays are a CCD array (ACIS), or a microchannel plate detector (HRC). The LETG is also often paired with ACIS. The instruments have different sensitivities, resolving powers, and wavelength coverages. The HETGS itself has two channels, the Medium Energy Grating and the High Energy Grating (MEG and HEG). The Chandra grating spectrometers are fully described in the Proposers' Observatory Guide (POG; http://cxc.harvard.edu/proposer/POG/).

In particular, see: which describe the wavelength coverage, efficiency, and resolving power of these instruments.

Note for non-X-ray spectroscopists:
On the summary pages, you will see spectra in counts units which includes the strong signature of the instrumental response. Quantitative analysis of X-ray spectra --- even at high resolution --- is most often done using the counts in conjunction with the response files via forward-folding. In addition, some instruments do not allow direct inversion - the LETG/HRC configuration does not allow separation of overlapping orders, so we cannot provide an accurate flux corrected spectrum (it is source-model dependent). On these pages, you will find flux-corrected spectra, and you can plot in spectra in flux units (for data taken with ACIS), and download an ASCII table of the plot. But be aware that these are still approximations and that robust results are available through detailed analysis.

Navigating TGCat

The TGCat Webpage consists of a number of subpages either accesible from the main page or another subpage. These pages include: The flow diagram to the right shows the access to various TGCat pages and indicates how they are opened. Notice that the HELP page can be though of as a central hub. Although the HELP page is designed for one way traffic it can be accessed through virtually any page. Also note that the Main page has two way traffic to most other pages.

A general user will navigate the path highlighted red:

Glossary of terms

Most of the terms found in TGCat are defined in the CIAO Dictionary. Any terms that cannot be found there will be defined below

TGCat Processing

TGCat processes all data within an automatic system to allow the best access to newly public gratings data ready for analysis, and to allow the tgcat team to provide the best extractions of gratings data with ease and little delay. All TGCat processing is done by ISIS/S-Lang functions which set up and call CIAO tools.

For an overview of the TGCat pipelines see: Processing Definitions
For full details of CIAO tools, see http://cxc.harvard.edu/ciao/intro/tools.html
For information about ISIS, see http://space.mit.edu/cxc/isis

subtopics:

Gratings And Modes

grating/detector/mode combination supported: Modes of ACIS: grating detector modes:
Detector Grating Mode
HETG ACIS-S TE
HETG ACIS-S CC
LETG ACIS-S TE
LETG ACIS-S CC
LETG HRC-S -

A quick guide to the extractions

Chandra data are identified by a "sequence number" and by an "observation identifier", or OBSID. The sequence number generally defines a single scientific observation, but due to operational constraints, any given sequence number for a specific target may be broken into several intervals, and each is assigned a unique OBSID. We extract spectra by OBSID. During analysis, these may be combined. In the summary plots, we show combined data in order to provide the best overview of the quality of the observation. The data products themselves maintain the individual components of the spectra (different orders, gratings).

- In a later release, we intend to also provide data combined over the obsids of each sequence number

Very briefly, the extraction process consists of the following steps:
  1. perform event processing (geometric and pulse-height corrections; filtering on good events, good times);
  2. determine the zeroth order's centroid (this is the origin of the wavelength scale);
  3. define a spatial mask which encloses spectral regions;
  4. filter on the spatial mask and transform spatial to spectral coordinates (wavelength, and cross-dispersion angle); if the detctor is ACIS, use the CCD energy to resolve orders.
  5. bin the spectra, sorted by order and grating, filtering on the cross-dispersion region; from the region adjacent to the source spectrum, bin a background spectrum (most important for LETG/HRC, rarely important for HETG/ACIS).
  6. Generate response files (effective area, or "ARF", and line-spread-function, or "RMF");
  7. compute a light curve from the diffracted photons;
  8. compute some summary spectral quantities (counts and fluxes in bands);
  9. generate summary plots.
- For an in-depth look at the pipelines for each Grating/Detector/Mode combination see Processing Definitions

Finding the Zeroth Order

TGCat uses one of two automatic methods for determining the zero order position: The methods used are checked during the Validation and Verification ( V&V ). If the method used failed to center on the zero order accurately, the alternate automatic method will be used or the V&V scientist will provide either exact coordinates of the zero order centroid or a region to act as an initial guess ( for cases where the target source is displaced from the proposers TARGET coordinates )

V&V process

All the extractions were inspected by a person familiar with the instruments and spectra. We check that the zeroth order position is accurate, that the spectral extraction region is appropriate, check for avoidable source confusion, and that all the products exist. The V&V procedure is guided by the same plots as presented in the preview pages. Comments and warnings are available in the results table ("v" link), and as download products. Comments provide information about the source which may be relevant for analysis. Warnings indicate problems or features which may complicate analysis. Some common comments and warnings are:

VV process - Obsids Not in Catalog

There were some processing errors which caused us to reject extraction until custom processing is done ( these are not included in the catalog): Finally, there were obsids which could not be processed due to inherent limitations (e.g., HETG used with just the ACIS-S3 (acis-7) readout, or LETG used with HRC-I); the list of these obsids can be viewed here .

The Search Page

The search page is the beginning of the path for finding, reviewing, and downloading Chandra gratings data. The page is separated into several mutually exclusive search types, each of which can be accessed by clicking on the appropriate button on the left side of the page.

subtopics:
Note that in all searches ( with the exception of "Derived Spectral Properties" ) the character "%" will match Zero or more characters ( numbers, symbols, letters ). In other words

722% will match 722,7220,7221,...,7228,7229
HD9312% will match HD93129 and HD93218 and HD93129A and HD93218B

In addition most searches allow the user to narrow down the results by limiting the detector and gratings to only certain combinations. This is typically useful when searching over a large coordinate area, or selecting on all obsids ( i.e. to find all ACIS/HETG observations ). These options can generally be ignored for other searches due to the limited number of gratings observations, see the trends page for more. Search by extraction target name(s), to search on more than a single name at a time enter each name separated by a new line.

During the V&V process the scientist verifies that automatic processing has identified the appropriate target for the extraction and ensures that the name matches the names stored in the TGCat database, which include: This search will return any TGCat source that has the given string within it, meaning that wildcards are implied at the begining and ending of the entry value. Additionaly any whitespace is both searched for and compressed, i.e. when in doubt include spaces

tau - will match "V* CM Tau" ( SIMBAD primary ID ) as well as "Proxima Centauri" and or course "tau CMa"
HD93129 - does not return any matches, while
HD 93129 - returns HD 93129AB

The TGCat name search provides the option to match the input to a SIMBAD identifier for the target. If the input is one of the SIMBAD Identifiers for a target, the coordinates of that target, as recorded in the SIMBAD catalog, will be passed back to TGCat to be matched within the "search radius" chosen. The following URL search is performed for each query:

http://simbad.u-strasbg.fr/simbad/sim-script?script=output%20console=off%20script=off %0a%20format%20object%20%22%25COO(d;A,D),%25IDLIST(1)%22%0aquery%20id%20{TARGET_NAME}

where {TARGET_NAME} is what the user has entered into the field.

An example of the output when searching for "crab":

http://simbad.u-strasbg.fr/simbad/sim-script?script=output%20console=off%20script=off %0a%20format%20object%20%22%25COO(d;A,D),%25IDLIST(1)%22%0aquery%20id%20crab :

083.63321,+22.01447,V* CM Tau

if using a 2 arcmin search radius ( default ), the TGCat database is then queried on

ra < 83.666543333333 and ra > 83.599876666667 and decl < 22.047803333333 and decl > 21.981136666667

TGCat stores type information for each source it extracts. At present the only types stored are SIMBAD types, but there are plans for expanding this.

the "primary type" will always be the SIMBAD primary type.

to select more than one type in a single category press the Control button and select. The numbers that appear beside each type are the number of sources to which that type is assigned but does not reflect the number of objects with a particular type as their primary type. There are three types of type searches that can be done: Coordinates can be entered in sexigessimal format or decimal format as per the following:

sexagessimal - 123:45:67.890 or 123 45 67.890 for RA and should be between 000:00:00.00 and 360:00:00.00
for DEC a "+" or "-" can be appended and values should be between -90:00:00.00 and +90:00:00.00
Decimal - 123.4567890 for RA and should be between 0.000 and 360.000
and (+/-)123.4567899 for DEC and should be between -90.000 and +90.000

All coordinates are Galactic J2000 epoch and in the IRCS frame All Chandra Observations are marked with a unique ObsId which can be used to query for particular observations. This search has two options for specifying obsids:

The Results Page

TGCat stores information on each extraction and the resulting data products in a set of flexible MySQL tables. The results page presents the user with column information from these tables based on the search criteria. The user may choose to add relavent display columns, sort data by any available column, link to publications, obsid information and _SIMBAD target information. Data download requests, custom spectral plotting, further row filtering and other functions may also be performed from this page

subtopics:

Overview

The Results page is opened after pressing the submit button on the search page and presents the results of a TGCat database query using the entered search parameters. There are two types of Tables that can be accessed from a TGCat search: The first table to appear depends on the type of search performed. In general the Source Table will be given for any query whose parameters are not specific to an extraction, and the Extractions table will be given for any query whose parameters cannot be generalized for all extractions of it's target.

The title box at the top of the page reports how many records ( if any ) were matched and returned. One row is listed in the data table for each row matched in the TGCat database, and either the default or user selected set of columns are displayed giving information on the Source or Extraction. The rows can be sorted by any displayed column by simply clicking the title of the column wherever it appears ( every ten rows a column header is displayed. Any one of these can be clicked to sort ). To sort the opposite direction simply click the desired column header twice.

Each row contains a set of links on the left hand side of the table and each link is coded by a single character and provides a tool tip eplaining where it goes. Several of the display columns also are links with tooltips describing their target ( please see the Table descriptions below for details on Links in each type of table ) Each row also has a checkbox on the far left hand column, when selected pressing the "Go" button will perfom the action selected in the radio buttons just above the "Go" button ( i.e. Clicking the "plot combined" radio button and pressing "Go" will open a plotting GUI combining spectra from all of the extractions whose checkbox are checked ). All of the checkboxes for the current data can be toggled using the "+/-" button in the header rows ( also requires javascript ).

The Extractions Data Table

The Extractions Data Table is a list of unique TGCat extractions. An extraction is a single unit of TGCat processing, and contains it's own uniqe data products and measures. There may be multiple extractions for any given source. To view the unique source information ( source table ) for a given set of extractions select the desired extraction(s) ( or none for all ) and select the "view sources" radio at the bottom of the page and hit "Go"

Each row on the data table contains a wealth of information and resources relating to the extraction it represents. Each row also provides the user with a very quick way to preview the spectral data by way of a tool tip that displays a flux spectra plot of the extraction. Here is a quick reference to the links and actions available in the Extractions Table:

Obsid Column -- Provides a link to the TGCat summary page and gives the user a quick view of the flux spectrum
Object Column -- Also Provides a link to the TGCat summary page and gives the user a quick view of the flux spectrum
limit -- Pressing "Go" eliminates all rows from the table who have not been selected
Download -- Pressing "Go" brings up a dialog allowing the user to schedule a download request
Plot Combined -- Pressing "Go" opens the plotting GUI combining spectra from all selected extractions

The Source Data Table

The source data table is contains a list of TGCat sources. Any one TGCat source has at least one extraction in the TGCat archive and may have mutiple. To view the extractions for one or more of the sources select the desired source(s) ( or none for all ) and choose the "view extractions" radio button at the botton of the page and hit "Go"

Note At present there are no data products directly tied to a TGCat source, however future plans include the archiving of combined products

The source table has the following features ( similar to extractions table ):

Changing Display Columns

The TGCat database tables store a wide variety of information about each extraction in the form of column data. A user can select to customize the information that gets displayed for each query result. To do this from the results page click the button on the bottom of the page titled "Change Columns". This will popup a dialog box that looks something like:



The available columns are organized by topic and can be selected/unselected for display by marking the appropriate checkbox and clicking "Apply". Assuming you have cookies enabled, checking the Save box will keep your preferred column settings for future sessions and queries. Clicking "Close" returns you to the page as it appeared before getting the dialog ( i.e. no changes made ) and clicking "Defaults" show only the default TGCat columns ( these setting may also be saved ) as shown in the DEFAULTS column section

Sorting Data

In order to efficiently browse queried data, TGCat provides the user with several ways to sort retrieved table data. Initially, when the table is displayed it is sorted by the "object" column in ascending alphabetical order ( even if the user chooses not to display the "object" column ). In each of the header columns there are three links that can be used to alter the sort: For example:

you searched the entire catalog ( obsid="%" ) and would like sort by several of the returned columns: first by detector, then by grating, then by object, and finally by exposure, so that for a group of the same detector,grating,and object the top most entry has the largest exposure.

First, reset the order as detector in ascending alphabetical order by clicking the "detector" column header twice ( it will start out with desc, twice to toggle ). Now the data list should show ACIS extractions first and HRC last. Then to add the grating order again alphabetically ascending we will click the link to the right of the column header "grating". Now we see that all ACIS HETG extractions appear first, then ACIS LETG and finally HRC LETG. Lets add the object sort by clicking the for the "object" header effectivly grouping similar objects under detector/grating combinations. Finally, lets see, for each object, which has the larget and smallest exposures by clicking the to the left of the "exposure" header, which will sub-sort exposure in descending time.

Download Data

One of the key features of TGCat is the ability to download analysis ready event and spectral data products. Pre-computed summary products are also available for download.

To download, follow these quick steps: This will initiate a download request and will be added to the list of requested downloads to be handled in the order recieved. There are no gaurentees to how long this request will take so it is suggested that you enter your email address and wait till a notification comes. Otherwise you can use check using the "Check Status" button on the download page which will appear after clicking the "Apply Button".

The available products are split into several categories, each one or more files for any given Grating type ( An "(H)" or "(L)" after the filename indicates that the product is only for HETG or LETG, respectively. )

Summary Page

During TGCat processing there are several summary products created for browsing purposes. These images are displayed for each extraction on it's own summary page ( navigated to by clicking the "v" link or one of several columns in the extractions data table.

All of the summary products can be downloaded at once by selecting the "SUM" option when downloading data.

subtopics:

A guide to the plots

Other summary products

Plot Customization

TGCat provides a GUI-like interface for the customization of spectral plots of both individual pha sepctra and combined phs spectra. Spectral orders can be combined or plotted separately as well as binned. A user can select from a range of different plot units and optional log scales, choose plotting limits, whether or not to display error bars, and can optionally request an ASCII dump out of the plot data to easily load into their desired plotting program without having to obtain larger file sets

subtopics:

Getting There

The plot customization page can be accessed in one of two ways:
  1. From the data results page click on either the Obsid or the Object identifiers for your desired extraction. This will take you to the summary preview page showing premade spectral and imaging plots. Click the button at the bottom of this page titled "Customize Plots"
  2. From the data results page you can plot single or combined spectra using the GUI by selecting one or more extractions with the checkboxes on the left hand side of the table, then select the "plot combined" radio button toward the bottom of the page and click "Go". This will take you directly to the plotting page. To get back to your results simply click the "Back" button

Lets Plot Something!

...A walkthrough of TGCat plotting...
  1. First find your favorite Chandra gratings observation in TGCat. Click on the Object or Obsid link for that extraction and then click on the "Customize Plots" button. We chose XTE J1118+48 ( A Low Absorbtion X-Ray Nova ) for this run through
  2. Now you will be presented with a blank plotting GUI
  3. Lets get something on the Canvas to begin with. Find the "replot" button in the far right bottom corner and click it
  4. You will then be presented with a plot of your spectra using the default plotting parameters
  5. This may not be the most interesting plot to look at so lets customize a little. We can bin the plot to obtain better signal to noise. Here chosing 8 seems okay. To do this you must check the "bin" box and enter you desired values in the entry fields. "min S/N" chooses bins that satisfy a signal to noise greater than "?" and min Ch groups the channel by a factor of "?" both can be applied in unison
  6. Lets take a look at an interesting range in the spectrum. There is a nice bump between 2 and 5 angstroms so we can enter those limits in the "X min" and "X max" fields
  7. Just for kicks lets also get the ASCII dump data when we plot. To do this simply check beside "Ascii"
  8. Then press replot and view your customized spectral plot! You can grab that ASCII dump file by clicking on the link at the top of the GUI viewport